TSASE

TSASE is used for saddle search. setup.py version string 1.0.

Versions

Registry pins for this code.
RoleRefCommitSource
saddle search master 98aac60b5d99 https://github.com/henkelmangroup/tsase

Version history

TSASE on Lennard-Jones 38. Each point is one recorded version of one method. Versions run left to right in numeric order. PAR-2 is omitted where that row has none. No line is drawn across a missing value.
TSASE on Lennard-Jones 38. Each point is one recorded version of one method. Versions run left to right in numeric order. PAR-2 is omitted where that row has none. No line is drawn across a missing value. PDF.

Best cost

Best cost for LJ38 double-ended saddleLJ38 double-ended saddle10²10³10⁴cost (force calls, log scale)OPTIM: 131OPTIM131Eon svn: 235.2Eon svn235.2eOn: 259.46eOn259.46pele: 293pele293geodesic: 1208.42geodesic1208.42COMPASS: 1517.3COMPASS1517.3Sella: 2055.3Sella2055.3rgsaddle: 2145.72rgsaddle2145.72TSASE: 3119.56TSASE3119.56LAMMPS: 4526.2LAMMPS4526.2ASE: 4912.84ASE4912.84
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Lennard-Jones 38 transition-state separationLennard-Jones 38 transition-state separation10²10³10⁴10⁵10⁶cost (force calls, log scale)Eon svn: 502.784Eon svn502.784eOn: 520.333eOn520.333OPTIM: 2885OPTIM2885Sella: 31447.3Sella31447.3pele: 52961.9pele52961.9COMPASS: 100831COMPASS100831rgsaddle: 266216rgsaddle266216geodesic: 412102geodesic412102ASE: 444244ASE444244TSASE: 451753TSASE451753LAMMPS: 451959LAMMPS451959
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Pt heptamer islandPt heptamer island10²10³10⁴cost (force calls, log scale)OPTIM: 103OPTIM103Eon svn: 110Eon svn110pele: 449.746pele449.746geodesic: 824.119geodesic824.119ASE: 926.475ASE926.475rgsaddle: 938.102rgsaddle938.102Sella: 968.525Sella968.525COMPASS: 1078.12COMPASS1078.12TSASE: 2524.53TSASE2524.53LAMMPS: 2668.64LAMMPS2668.64eOn: 3080.19eOn3080.19
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Pt heptamer islandPt heptamer island10⁵10⁶cost (force calls, log scale)TSASE: 293200TSASE293200Eon svn: 496000Eon svn496000
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Lennard-Jones 38Lennard-Jones 3810¹10²10³10⁴10⁵cost (force calls, log scale)Sella: 17.8Sella17.8OPTIM: 25OPTIM25pele: 25pele25TSASE: 25TSASE25rgsaddle: 26.12rgsaddle26.12eOn: 26.385eOn26.385Eon svn: 26.385Eon svn26.385pARTn: 2619.84pARTn2619.84pysisyphus: 4017.14pysisyphus4017.14SoftSaddle: 18700.6SoftSaddle18700.6
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Lennard-Jones 38 clustersLennard-Jones 38 clusters10¹10²10³10⁴10⁵cost (force calls, log scale)unknown: 79unknown79rgmin: 81.881rgmin81.881TSASE: 166TSASE166OPTIM: 176OPTIM176pele: 179pele179eOn: 180.137eOn180.137Eon svn: 181Eon svn181DL-FIND: 231.908DL-FIND231.908GMIN: 301.399GMIN301.399ASE: 374.645ASE374.645vc-SQNM: 598.05vc-SQNM598.05Sella: 710.089Sella710.089LAMMPS: 1123.81LAMMPS1123.81pysisyphus: 15124.7pysisyphus15124.7
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Morse bulkMorse bulk10⁰10¹10²10³10⁴10⁵cost (force calls, log scale)rgmin: 8.35rgmin8.35TSASE: 19TSASE19Sella: 28.89Sella28.89ASE: 28.91ASE28.91GMIN: 34.4GMIN34.4vc-SQNM: 40.51vc-SQNM40.51OPTIM: 46OPTIM46pele: 51pele51Eon svn: 52Eon svn52eOn: 54.18eOn54.18DL-FIND: 13626.5DL-FIND13626.5LAMMPS: 17656.7LAMMPS17656.7
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Pt heptamer islandPt heptamer island10²10³10⁴cost (force calls, log scale)geodesic: 318.923geodesic318.923eOn: 319.538eOn319.538Eon svn: 336.769Eon svn336.769COMPASS: 561.462COMPASS561.462ASE: 606.923ASE606.923rgsaddle: 732.462rgsaddle732.462LAMMPS: 1398.46LAMMPS1398.46TSASE: 1521.15TSASE1521.15
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Lennard-Jones 38Lennard-Jones 3810¹10²10³10⁴10⁵cost (force calls, log scale)Sella: 68.74Sella68.74OPTIM: 145OPTIM145pele: 192pele192Eon svn: 237Eon svn237eOn: 280.33eOn280.33OptKing: 7030.36OptKing7030.36rgsaddle: 7803.19rgsaddle7803.19pARTn: 20000pARTn20000TSASE: 20000TSASE20000
A shorter bar is a lower cost on a log scale shared by the codes of this problem.
Best cost for Pt heptamer islandPt heptamer island10¹10²10³10⁴cost (force calls, log scale)Sella: 53Sella53OPTIM: 71OPTIM71pele: 88pele88Eon svn: 106Eon svn106eOn: 108.796eOn108.796rgsaddle: 223.898rgsaddle223.898OptKing: 1059.98OptKing1059.98TSASE: 1144.31TSASE1144.31pARTn: 1970.22pARTn1970.22
A shorter bar is a lower cost on a log scale shared by the codes of this problem.

Results

Ranked rows for this code, one version and one method on each row. PAR-2 counts a finished run as the calls it used and a failed run as twice the cap. An archived row shows the average it published, and its PAR-2 applies that rule to the failures the entry records. Scoring rules.

Every ranked row for this code. Select a column heading to sort.
SuiteProblemRowFamilyFamily rankUnitPAR-2PublishedMedian callsMean callsHessiansFD callsFailuresRuns
Double-ended saddle search LJ38 double-ended saddle TSASE (1.0) · CI-NEB Band / NEB 15 force calls 3119.56 1833 1726.98 0 0 crash 0, divergence 7, cap 17, wrong_stationary 0 50
Double-ended saddle search LJ38 double-ended saddle TSASE (1.0) · NEB Band / NEB 20 force calls 5000 1633 1652.86 0 0 crash 0, divergence 36, cap 14, wrong_stationary 0 50
Double-ended saddle search Lennard-Jones 38 transition-state separation TSASE (1.0) · CI-NEB Band / NEB 19 force calls 451753 10000 9690.35 0 0 crash 0, divergence 1, cap 43, wrong_stationary 2 51
Double-ended saddle search Lennard-Jones 38 transition-state separation TSASE (1.0) · NEB Band / NEB 22 force calls 500000 10000 9720.22 0 0 crash 0, divergence 3, cap 44, wrong_stationary 4 51
Double-ended saddle search Pt heptamer island TSASE (1.0) · CI-NEB Band / NEB 17 force calls 2524.53 564 639.61 0 0 crash 0, divergence 20, cap 1, wrong_stationary 0 59
Double-ended saddle search Pt heptamer island TSASE (1.0) · NEB Band / NEB 20 force calls 6000 543 788.746 0 0 crash 0, divergence 56, cap 3, wrong_stationary 0 59
Harmonic transition state theory Pt heptamer island TSASE · quenchDimer+neb-QM Band / NEB 1 force calls 293200 293200 0 0 not recorded 10
Harmonic transition state theory Pt heptamer island TSASE · Dimer-QM rotation: max=50, tol=5 Minimum mode 9 force calls 3.239e+06 3.239e+06 0 0 not recorded 4
Harmonic transition state theory Pt heptamer island TSASE · alphaDimer-QM Minimum mode 10 force calls 1.908e+07 1.908e+07 0 0 not recorded 1
Lowest eigenvector Lennard-Jones 38 TSASE (410) · tsase-lanczos Minimum mode 2 force calls 25 25 25 0 0 0 failed 200
Lowest eigenvector Lennard-Jones 38 TSASE (408) · tsase-dimer-bfgs Minimum mode 8 force calls 27 27 27 0 0 0 failed 200
Lowest eigenvector Lennard-Jones 38 TSASE (408) · tsase-dimer-cg Minimum mode 13 force calls 29 29 29 0 0 0 failed 200
Lowest eigenvector Lennard-Jones 38 TSASE (1.0) · SSDimer Minimum mode 19 force calls 2420.61 233 267.945 0 0 crash 0, divergence 22, cap 0, wrong_stationary 0 200
Minimization Lennard-Jones 38 clusters tsase-SDLBFGS maxstep=0.1 optimizer='maxatom' Minimizers 4 force calls 166 166 166 0 0 0 failed 1000
Minimization Lennard-Jones 38 clusters TSASE (1.0) · SDLBFGS Minimizers 15 force calls 257.2 169 177.96 0 0 crash 0, divergence 0, cap 0, wrong_stationary 4 1000
Minimization Lennard-Jones 38 clusters TSASE (1.0) · MDMin Minimizers 71 force calls 20000 10000 10000 0 0 crash 0, divergence 0, cap 1000, wrong_stationary 0 1000
Minimization Morse bulk tsase-SDLBFGS maxstep=0.1 optimizer='maxatom' Minimizers 4 force calls 19 19 19 0 0 0 failed 100
Minimization Morse bulk TSASE (1.0) · SDLBFGS Minimizers 61 force calls 17606.4 50 50.37 0 0 crash 0, divergence 0, cap 0, wrong_stationary 88 100
Nudged elastic band Pt heptamer island TSASE (1.0) · CI-NEB Band / NEB 11 force calls per band 1521.15 1427 1521.15 0 0 crash 0, divergence 0, cap 0, wrong_stationary 0 13
Nudged elastic band Pt heptamer island TSASE (1.0) · NEB Band / NEB 13 force calls per band 20000 1459 1521.77 0 0 crash 0, divergence 13, cap 0, wrong_stationary 0 13
Transition state optimization Lennard-Jones 38 TSASE (1.0) · SSDimer Minimum mode 14 force calls 20000 10000 10000 0 0 crash 0, divergence 0, cap 200, wrong_stationary 0 200
Transition state optimization Pt heptamer island TSASE (1.0) · SSDimer Minimum mode 12 force calls 1144.31 892 1144.31 0 0 crash 0, divergence 0, cap 0, wrong_stationary 0 49